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the conda virtual environment has been created in /storage/gpfs_data/juno/test_conda/ for the 3.8 version of Python.
After this, the screen will show
"Continue creating environment (y / [n])?"
so that a confirm is requested.
In this case, the submit description file and the executable file have to be in the folder /storage/gpfs_data/juno/test_conda/.The content of the executable submit description file is:
| Code Block |
|---|
$ cat test.sub executable = test.sh output = /storage/gpfs_data/juno/test_conda/job.out error = /storage/gpfs_data/juno/test_conda/job.err log = /storage/gpfs_data/juno/test_conda/job.log WhenToTransferOutput = ON_EXIT ShouldTransferFiles = YES queue 1 |
and for the submit description filescript:
| Code Block |
|---|
$ cat test.sh #!/bin/bash /storage/gpfs_data/juno/test_conda/bin/python --version /storage/gpfs_data/juno/test_conda/bin/python -c 'import h5py' /storage/gpfs_data/juno/test_conda/bin/python -c 'import matplotlib' |
In this instance, the h5py and the matplotlib packages have been are imported.
To send the job to the submit-node sn-02
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and to check that all is going well so far:
| Code Block |
|---|
$ condor_q -name sn-02.cr.cnaf.infn.it 14243269 [...] Total for query: 1 jobs; 1 completed, 0 removed, 0 idle, 0 running, 0 held, 0 suspended |
Finally, when the job completes, the errors and the output of the submission can be retrieved via the condor_transfer_data 14243269 command and found at:
/storage/gpfs_data/juno/test_conda/job.err/storage/gpfs_data/juno/test_conda/job.out
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